AlphaSimR
Stochastic breeding-program simulations with DNA-level detail.
Nov 8, 2025
matrixCorr: Correlation & Agreement Toolkit
An R package that collects correlation, shrinkage, and agreement estimators in one statistically sound toolbox.
Nov 1, 2024
A Hierarchical Approach for Evaluating Athlete Performance with an Application in Elite Basketball
ON score is a comprehensive athlete rating using mixed-regression and PCA on 4-season NBA data.
Jan 24, 2024
lcc
Longitudinal concordance, Pearson, and accuracy profiles via polynomial mixed-effects models.
Nov 25, 2023
Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps
Benchmarked the Reads2Map workflows and set best-practice defaults so breeders can build reliable linkage maps from noisy GBS data.
Oct 27, 2023
AGHmatrix
Fast pedigree (A), genomic (G), and combined (H) relationship matrices for diploid and autopolyploid species.
Oct 3, 2023
Navigating the Shiny Universe with Golem
The golem package In the world of R programming, Shiny applications let us make interactive web apps using R code. The golem package (Fay et al. 2021) makes it easier to develop these apps. It brings new tools and methods to this area, helping developers handle complex tasks more simply. Making Things with Structure Think of making a sculpture out of clay. At first, the big lump of clay can be hard to handle.
Oct 2, 2023
Reads2Map Tools
Utilities that power Reads2Map workflows: genotype calling pipelines, PedigreeSim interfaces, and VCF/onemap conversions.
Aug 1, 2023
Comparison of Markerless and Marker-based Motion Capture Systems using 95% Functional Limits of Agreement in a Linear Mixed-Effects Modelling Framework
Markerless motion capture challenges traditional systems. A mixed-effects model assesses their agreement for reliable human movement analysis.
Jul 15, 2023
AlphaPart
Partition genetic trends to quantify the sources of genetic gain in breeding programmes.
Nov 15, 2022