AGHmatrix

AGHmatrix computes pedigree (A), genomic (G), and combined H relationship matrices for diploid and autopolyploid species. It implements additive and non-additive models, supporting generalized breeding-value estimation and genomic prediction pipelines.

Key features

• A/G/H matrices with multiple methodologies, including autopolyploid adjustments.
• Efficient C++ backends via Rcpp/RcppArmadillo for large pedigrees.
• Works seamlessly with zoo/matrixStats for downstream analytics.

Package details

• Version: 2.1.4 (CRAN) with dev version 3.0.0.
• Depends on R ≥ 3.6.0; imports Matrix, zoo (latest release), with dev version using Rcpp and matrixStats.
• DOI: 10.32614/CRAN.package.AGHmatrix
• Maintainer: Rodrigo Amadeu rramadeu@gmail.com
• Contributors include Luis Ferrao, Thiago Oliveira, Catherine Cellon, Leticia Lara, Marcio Resende, Ivone Oliveira, Patricio Munoz, Augusto Garcia, and more.
• License: GPL-3.

Documentation, reference manuals, tutorials, binaries, and reverse dependency information are available on CRAN.